PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma106g00660.1
Common NameZOSMA_106G00660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 41aa    MW: 4682.56 Da    PI: 9.3384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma106g00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-053371855
                      HHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH 18 safeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                      +++  L++l+P +    +kK   Ka +L + ++Y++sLq
  Zosma106g00660.1  3 ERMKFLQDLVPGC----NKKvTGKAVMLDEIIHYVQSLQ 37
                      667779*******....6676*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.461136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-9139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-9139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
MSERMKFLQD LVPGCNKKVT GKAVMLDEII HYVQSLQRQF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977203.13e-17hypothetical protein SELMODRAFT_106386, partial
SwissprotQ9CAA92e-18BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0K9Q6385e-23A0A0K9Q638_Z
STRINGEFJ218128e-17(Selaginella moellendorffii)
STRINGAT1G68920.15e-16(Arabidopsis thaliana)
STRINGfgenesh2_kg.2__1151__AT1G68920.35e-16(Arabidopsis lyrata)
STRINGVIT_05s0029g00390.t015e-16(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-19bHLH family protein